PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g00250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 500aa    MW: 57405.1 Da    PI: 5.4956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g00250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16231051199
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ rl +p+kf++++g     +  l ++ ++g  Wevk    k+ ++++l+kGWkeFv+   L+ g  v Fk++g+s+   +v +f++
  Vang06g00250.1  23 TNLERLKIPNKFTRKYGDG--LPNPLLMKLSNGTAWEVKW--AKHNREVWLEKGWKEFVQHYSLDHGHLVCFKYEGTSQI--HVIIFDQ 105
                     456789**********655..44458888899********..********************************997766..9999886 PP

2B3505.2e-162513321299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ + +p+ f++++gg    +  l ++ ++g +W+v    +k sg+++l++GWkeFv+   L+ g fv Fk++g+se   +v ++++
  Vang06g00250.1 251 NLQSIKIPNIFTANYGGG--LPNPLFMKLPNGTEWKVIW--EKDSGEIWLREGWKEFVEHYSLDHGHFVFFKYEGTSEV--HVNICDQ 332
                     345578******999766..44459************99..********************************997776..****997 PP

3B333.57.6e-11403496198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ff+v+++++++k  rl++p        ++ ee+k+  + ++   sW+v+l ++++  + + +++G   F  + +++ gD++vF+l+++++  ++v
  Vang06g00250.1 403 FFTVFIKPSHGKDYRLRIPDLKG----II-EEKKKCAVLQLGEISWKVNLLFNNSCFAhHSFGAGIHLFLTESEVQPGDVCVFELISKEDCVFKV 492
                     89999*************97754....33.344688999***********998887768***************************887777899 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++f+
  Vang06g00250.1 493 HIFK 496
                     9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.0713106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2014106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2215106IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-1715104No hitNo description
SMARTSM010193.1E-1416106IPR003340B3 DNA binding domain
PfamPF023627.9E-1423105IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393240333IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-18241339IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18242333IPR015300DNA-binding pseudobarrel domain
CDDcd100173.33E-13242331No hitNo description
SMARTSM010193.8E-13243333IPR003340B3 DNA binding domain
PfamPF023623.8E-13251332IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-12399498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-10400498IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-8403497IPR003340B3 DNA binding domain
PROSITE profilePS508637.711403498IPR003340B3 DNA binding domain
CDDcd100171.38E-9403496No hitNo description
SMARTSM010190.005403498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MASQILRTDA TLPIFFFKVI LKTNLERLKI PNKFTRKYGD GLPNPLLMKL SNGTAWEVKW  60
AKHNREVWLE KGWKEFVQHY SLDHGHLVCF KYEGTSQIHV IIFDQSAVEI DYFCGTDDEN  120
DNLVQTEDTA DENDNLVQTE DKPNMILDEE TQQKAEQIGG ENYAQRTSSL NWPTQTRARE  180
IASNFVSCNP FFTVFIKPCH ERQYRLCVPD LKDIIGSKKC AVLQLGERSW KCTQRNATLT  240
ISFFKVILKT NLQSIKIPNI FTANYGGGLP NPLFMKLPNG TEWKVIWEKD SGEIWLREGW  300
KEFVEHYSLD HGHFVFFKYE GTSEVHVNIC DQSGVEIDYL CGTGDGNYNL DQNEEEPIII  360
LDEEEDPEQI RGETSVQRTS SLNRPSQTRA REVACNFVSC NPFFTVFIKP SHGKDYRLRI  420
PDLKGIIEEK KKCAVLQLGE ISWKVNLLFN NSCFAHHSFG AGIHLFLTES EVQPGDVCVF  480
ELISKEDCVF KVHIFKSDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512944.11e-154PREDICTED: B3 domain-containing protein At4g01580-like isoform X1
TrEMBLA0A0L9U0N80.0A0A0L9U0N8_PHAAN; Uncharacterized protein
STRINGGLYMA20G24268.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-19B3 family protein